CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1053
Accession number EU735539
Name 05BRRJ200
SubtypeCRF40_BF
CountryBrazil
Sampling year 2005

EU735539 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagc gcgctcggca agaggcgagg ggcggcggac tggtgagtac gccaaaaata aattttgact agcggaggct agaaggagag a

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012