CESSHIV-1 database

General information on HIV-1 isolate

# 1203

Accession number	FJ195091
Name	BREPM1081
Subtype	B
Country	Brazil
Sampling year	2005

FJ195091 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gacggcgact ggtgagtacg ccaaaaaatt aaaaattttg actagcggag gctagaagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy