CESSHIV-1 database

General information on HIV-1 isolate

# 1219

Accession number	FJ213780
Name	UY05_4752
Subtype	CRF38_BF1
Country	Uruguay
Sampling year	2005
Patient	4752

FJ213780 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcagcaa gaggcgagag -cggcgactgg tgagtacgcc aat--ttttgac tagcggaggc tagaaggaga ga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy