CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1256
Accession number FJ437017
Name 03RU951
SubtypeA
CountryRussia
Sampling year 2003

FJ437017 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggactcggc ttgctgaggt gcacacagca agaggcgaga g-cggcgactg gtgagtacgc ctaaagattt ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy