CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1258
Accession number FJ437019
Name 03RU993
SubtypeA
CountryRussia
Sampling year 2003

FJ437019 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacgcagcaa gaggcgagag -cggcgactgg tgagtacgcc taaagatttt tgactagcgg aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012