CESSHIV-1 database

General information on HIV-1 isolate

# 2012

Accession number	FJ496000
Name	CH77E_flA1
Subtype	B
Country	USA
Sampling year	2006
Patient	700010077

FJ496000 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gaggcgactg gtgagtacgc caataatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

FJ496001(#2013) FJ496002(#2014) FJ496003(#2015) FJ496004(#2016) FJ496005(#2017) FJ496006(#2018) FJ496007(#2019) FJ496024(#2911) FJ496025(#2912) FJ496026(#2913) FJ496027(#2914) FJ496033(#2915) FJ496034(#2916) FJ496035(#2917) FJ496036(#2918) FJ496037(#2919) FJ496038(#2920) FJ496039(#2921) FJ496040(#2922) FJ496041(#2923) FJ496058(#2924) FJ496059(#2925) FJ496068(#2926) FJ496069(#2927) FJ496070(#3003) FJ496071(#2928) FJ496123(#2933) FJ496128(#2934) FJ496130(#2935) FJ496131(#2936) FJ496132(#2937) FJ496133(#2938) FJ496134(#2939) FJ496135(#2940) FJ496136(#2941) FJ919955(#2860) FJ919956(#2861) FJ919957(#2862) FJ919958(#2863) FJ919959(#2864) FJ919960(#2865) FJ919961(#2866) FJ919962(#2867)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy