CESSHIV-1 database

General information on HIV-1 isolate

# 2931

Accession number	FJ496088
Name	CH40E_N13
Subtype	B
Country	USA
Sampling year	2006
Patient	700010040

FJ496088 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB480692(#2717) AY314054(#359) AY314055(#360) AY314058(#363) AY314062(#367) DQ487191(#726) EF370343(#1782) FJ495819(#1538) FJ495820(#1539) FJ495821(#1540) FJ495822(#1541) FJ495823(#1542) FJ495824(#2002) FJ495825(#2003) FJ495826(#2004) FJ495862(#2833) FJ495863(#2834) FJ495864(#2835) FJ495866(#2837) FJ495867(#2838) FJ495868(#2839) FJ495869(#2840) FJ495877(#2841) FJ495878(#2842) FJ495879(#2848) FJ495880(#2849) FJ495881(#2850) FJ495882(#2851) FJ495883(#2852) FJ495884(#2853) FJ495885(#2854) FJ495886(#2855) FJ495887(#2856) FJ495900(#2857) FJ495901(#2858) FJ495902(#2859) FJ495903(#2868) FJ495904(#2869) FJ495905(#2870) FJ495906(#2871) FJ495907(#2872) FJ495908(#2873) FJ495909(#2874) FJ495910(#2875) FJ495925(#2876) FJ495926(#2877) FJ495927(#2878) FJ495928(#2879) FJ495929(#2880) FJ495930(#2881) FJ495931(#2882) FJ495932(#2883) FJ495933(#2884) FJ495934(#2885) FJ495935(#2886) FJ495936(#2887) FJ496086(#2929) FJ496087(#2930) FJ496089(#2932) U43141(#13)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy