CESSHIV-1 database

General information on HIV-1 isolate

# 2611

Accession number	FJ496155
Name	TRJO_flC6
Subtype	B
Country	USA
Sampling year	2001
Patient	TRJO4551

FJ496155 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

FJ496151(#2607) FJ496152(#2608) FJ496153(#2609) FJ496154(#2610) FJ496156(#2612) FJ496157(#2613)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy