CESSHIV-1 database

General information on HIV-1 isolate

# 1277

Accession number	FJ503058
Name	04RU1147
Subtype	A
Country	Russia
Sampling year	2004

FJ503058 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc taaagatttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF193277(#80) EF119579(#1377) FJ437009(#1248) FJ437011(#1250) FJ437012(#1251) FJ437013(#1252) FJ437015(#1254) FJ437016(#1255) FJ437018(#1257) FJ437024(#1263) FJ437025(#1264) FJ503051(#1270) FJ503053(#1272) FJ503055(#1274) FJ503056(#1275) FJ503057(#1276)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy