CESSHIV-1 database

General information on HIV-1 isolate

# 2387

Accession number	FJ614965
Name	08MHI4_4658
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2008
Patient	MHI

FJ614965 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

aagactcggc ttgctgaggt gcacacagca agaggcgaga g-cggcgactg gtaagtacgc caaa--ttttga ctagcagagg ctagaaggaa aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy