CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1854
Accession number FJ771009
Name 06BR579
SubtypeF1
CountryBrazil
Sampling year 2006

FJ771009 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcggctgg tgagtacgcc aaat-ttttga ctagcggagg ctagaaggag aga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy