CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3066
Accession number GQ328744
Name RBF168
SubtypeGroup P
CountryFrance (Cameroon)
Sampling year 2006
PatientRBF168

GQ328744 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct cagcggagtg cacctgctga gaggcgagag gagctcacag cggtgagtac attttgtcag tggtggctga ccctagagga aggggcgaag tctctagggg ag-ga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012