CESSHIV-1 database

General information on HIV-1 isolate

# 3315

Accession number	GQ365652
Name	01_BR_RGS69
Subtype	BC
Country	Brazil
Sampling year	2001

GQ365652 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc atttttattt gactagcgaa ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy