CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3207
Accession number GQ372986
Name ES P1751
Subtype02A1
CountrySpain
Sampling year 2007
PatientP1751

GQ372986 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacgcagcaa gaggcgagag -cggcgactgg tgagtacgcc ga---ttttgact agcggaggct agaaggagag a

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy