CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3557
Accession number GQ387144
Name 98PTHEM103.12.2346
SubtypeCRF14_BG
CountryPortugal
Sampling year 1998
PatientTHEM103

GQ387144 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcccgcacag caagaggcaa gag-cggcggc tggtgagtac gccataaatt ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012