CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3565
Accession number GQ387152
Name 98PTHEM104.2.2290
SubtypeCRF14_BG
CountryPortugal
Sampling year 1996
PatientTHEM104

GQ387152 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcccgcacag caagaggcga gag-cggcgac tggtgagtac gccataaatt ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012