CESSHIV-1 database

General information on HIV-1 isolate

# 3367

Accession number	GQ999977
Name	CAP65_6w
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP65

GQ999977 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aaatttttat ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy