CESSHIV-1 database

General information on HIV-1 isolate

# 3370

Accession number	GQ999980
Name	CAP88_5w_F2
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP88

GQ999980 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gatttgtatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy