CESSHIV-1 database

General information on HIV-1 isolate

# 3371

Accession number	GQ999981
Name	CAP174_4w
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP174

GQ999981 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aattttcttt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy