CESSHIV-1 database

General information on HIV-1 isolate

# 3376

Accession number	GQ999986
Name	CAP244_8w_F1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP244

GQ999986 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcacgcggca agaggcgagg gg-ggcgactg gtgagtacgc cattttattt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy