CESSHIV-1 database

General information on HIV-1 isolate

# 3379

Accession number	GQ999989
Name	CAP256_6w
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP256

GQ999989 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacacc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy