CESSHIV-1 database

General information on HIV-1 isolate

# 6

Accession number	M93259
Name	YU-10
Subtype	B
Country	USA
Sampling year	1986
Patient	YU

M93259 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaaattt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

EF370183(#1456) EF370260(#1732) EU047670(#1868) M93258(#7)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy