CESSHIV-1 database

General information on HIV-1 isolate

# 29

Accession number	U21135
Name	WEAU 1.60
Subtype	B
Country	USA
Sampling year	1990
Patient	WEAU0575

U21135 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

FJ496158(#2614) FJ496159(#2615) FJ496160(#2616) FJ496161(#2617) FJ496162(#2618) FJ496163(#2619) FJ496164(#2620) FJ496165(#2621) FJ496166(#2622)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy