CESSHIV-1 database

General information on HIV-1 isolate

# 164

Accession number	AB070353
Name	93JP-NH2env
Subtype	CRF01_AE
Country	Japan
Sampling year	1993
Patient	NH2
Comments	Synthetic DNA

AB070353 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgtg tgcccgtctg tgttaggact ctggtaacta gagatccctc agaccactct agactgaata -aaaatctcta gca

Isolates with identical sequences of region:

AB052995(#168) BD187399(#1087)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy