CESSHIV-1 database

General information on HIV-1 isolate

# 887

Accession number	AB253709
Name	pJPDR2192AE31
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH19-203

AB253709 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgtg tgcccgtctg tgttaggact ctggtaacta gagatccctc agaccactct agactgagta -aaaatctcta gca

Isolates with identical sequences of region:

AB052601(#1057) AB052602(#1058) AB052603(#1059) AB052607(#1063) AB052611(#1067) AB052612(#1068) AB070352(#163) AB220944(#727) AB220946(#729) AB253423(#906) AB253681(#859) AB253682(#860) AB253684(#862) AB253685(#863) AB253686(#864) AB253687(#865) AB253688(#866) AB253689(#867) AB253690(#868) AB253691(#869) AB253692(#870) AB253693(#871) AB253694(#872) AB253696(#874) AB253697(#875) AB253698(#876) AB253700(#878) AB253701(#879) AB253702(#880) AB253703(#881) AB253705(#883) AB253706(#884) AB253707(#885) AB253708(#886) AB253711(#889) AB253712(#890) AB253713(#891) AB253716(#894) AF170549(#1400) AF196744(#1310) AF196746(#1312) AY118155(#1988) U51188(#369) U51296(#2515) U51297(#2516) U67769(#2520)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy