CESSHIV-1 database

General information on HIV-1 isolate

# 897

Accession number	AB253719
Name	pJPDR5032AE09
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH19-203

AB253719 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa agcctcaata aagcttgctt tgagtgctta aagtggtgtg tgcccatctg tgttaggact ctggtaacta gagatccctc agaccactct agactgagta -aaaatctcta gca

Isolates with identical sequences of region:

AB253717(#895) AB253718(#896) AB253720(#898) AB253721(#899) AB253722(#900) AB253723(#901) AB253724(#902) AB253725(#903)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy