CESSHIV-1 database

General information on HIV-1 isolate

# 923

Accession number	AB287376
Name	p92RW025A17
Subtype	A1
Country	Rwanda
Sampling year	1992
Patient	025

AB287376 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgagta-a aaatctctag ca

Isolates with identical sequences of region:

AY610997(#2057)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy