CESSHIV-1 database

General information on HIV-1 isolate

# 2737

Accession number	AB485634
Name	DJ263
Subtype	CRF02_AG
Country	France (Djibouti)
Submitted to NCBI	2009
Patient	DJ263

AB485634 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta ggttgtgtaa aaaatctcta gca

Isolates with identical sequences of region:

AB485635(#2738)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy