CESSHIV-1 database

General information on HIV-1 isolate

# 2750

Accession number	AB485659
Name	BCI_R07
Subtype	F1
Country	Romania
Sampling year	1996
Patient	BCI7

AB485659 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtttgactc tggtaactag agatccctca gaccatttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AB485658(#2749) AF196764(#1327)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy