CESSHIV-1 database

General information on HIV-1 isolate

# 3429

Accession number	AF049494
Name	499JC16
Subtype	B
Country	USA
Submitted to NCBI	1998
Patient	C499
Comments	Experimental

AF049494 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg aaaaatctct agca

Isolates with identical sequences of region:

EF370211(#2233) EU047600(#2270) K02007(#20)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy