CESSHIV-1 database

General information on HIV-1 isolate

# 142

Accession number	AF110976
Name	C-96BW16B01
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW16

AF110976 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacctttttg gt-agtgtgga aaatctctag ca

Isolates with identical sequences of region:

AB191661(#1215) AF096638(#1919) AY047313(#3189)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy