CESSHIV-1 database

General information on HIV-1 isolate

# 143

Accession number	AF110977
Name	C-96BW16D14
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW16

AF110977 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttttg gt-agtgtgga aaatctctag ca

Isolates with identical sequences of region:

AB191651(#1177) AB191660(#1214) AM076891(#1593)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy