CESSHIV-1 database

General information on HIV-1 isolate

# 2084

Accession number	AF196729
Name	93ZM45
Subtype	C
Country	Zambia
Sampling year	1993
Patient	93ZM45

AF196729 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccacttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EF370281(#1742) EU047648(#1874)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy