CESSHIV-1 database

General information on HIV-1 isolate

# 1313

Accession number	AF196747
Name	93CB76
Subtype	G
Country	(Caribbean)
Sampling year	1993
Patient	93CB76

AF196747 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gacagtgta-a aaatctctag ca

Isolates with identical sequences of region:

AB231893(#734) AB287003(#921) AB287004(#922) AY586549(#677)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy