CESSHIV-1 database

General information on HIV-1 isolate

# 1968

Accession number	AF239646
Name	PAIR18_INFANT
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	18-baby

AF239646 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa agcctcaata aagcttgcct tgagtgctct aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc agactctttt -gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AF239628(#1950)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy