CESSHIV-1 database

General information on HIV-1 isolate

# 1073

Accession number	AF256210
Name	S61K15
Subtype	B
Country	Spain
Sampling year	1989
Patient	89ES061

AF256210 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtga aaaatctcta gca

Isolates with identical sequences of region:

U69586(#256) U69587(#257) U69588(#258)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy