CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 149
Accession number AF286236
Name 83CD003
SubtypeU
CountryDRC
Sampling year 1983
PatientZ3

AF286236 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttaa agtagtgtgt gcccgtctgt tgtgtgactc tggtatctag agatccctca gaccacttta ggtagtgtgg aaaatctcta gca

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy