CESSHIV-1 database

General information on HIV-1 isolate

# 1347

Accession number	AF413959
Name	98UA0116 clone 3-ltr
Subtype	A1
Country	Ukraine
Sampling year	2000
Patient	UA0116

AF413959 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtatgactc tggtaactag agatccctca gactactcta ggcagtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF413958(#1346) AF413987(#285)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy