CESSHIV-1 database

General information on HIV-1 isolate

# 1077

Accession number	AF538304
Name	C24
Subtype	B
Country	Australia
Sampling year	1995
Patient	C24

AF538304 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg agaatctcta gca

Isolates with identical sequences of region:

AF538307(#1080)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy