CESSHIV-1 database

General information on HIV-1 isolate

# 1592

Accession number	AM076890
Name	PG28_5
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG28

AM076890 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttgt ggtagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AB191680(#1370) AB485646(#2726) AB485647(#2727) AF110964(#130) AF239638(#1960) AF239639(#1961) AM076847(#1547) AM076889(#1591) AY047301(#3172) AY932726(#2034) EU293447(#1207) FJ554570(#3469)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy