CESSHIV-1 database

General information on HIV-1 isolate

# 2036

Accession number	AY610976
Name	01SP27595
Subtype	A1
Country	Spain (Equatorial Guinea)
Sampling year	2001

AY610976 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa agcctcaata aagcttgcct tgagtgcctt gagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc agactactct aggcggtgta -aaaatctcta gca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy