CESSHIV-1 database

General information on HIV-1 isolate

# 2038

Accession number	AY610978
Name	03SP91571
Subtype	CRF11_cpx
Country	Spain (Equatorial Guinea)
Sampling year	2003

AY610978 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacc-ttttag tcagtgtgga aaatctctag ca

Isolates with identical sequences of region:

GU177863(#3290) GU237072(#3150) GU647198(#3318)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy