CESSHIV-1 database

General information on HIV-1 isolate

# 2211

Accession number	AY932743
Name	TZLM668
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	668

AY932743 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacctcttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AF196723(#1293) AJ320484(#395) M17451(#5)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy