CESSHIV-1 database

General information on HIV-1 isolate

# 849

Accession number	EF036527
Name	Fj055
Subtype	CRF01_AE
Country	China
Sampling year	2005
Patient	Fj055

EF036527 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa agcctcaata aagcttgcct tgagtgcttg aagtggtgtg tgcccatctg tgttaggact ctggtaacta gagatccctc agaccactct agactgagta -aaaatctcta gca

Isolates with identical sequences of region:

AB052604(#1060) AB253695(#873) AB253699(#877)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy