CESSHIV-1 database

General information on HIV-1 isolate

# 854

Accession number	EF036532
Name	Fj063
Subtype	CRF01_AE
Country	China
Sampling year	2006
Patient	Fj063

EF036532 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgtg tgcccgtctg tgttaggact ctggtaacta gagatccctc agaccactct agactaagta -aaaatctcta gca

Isolates with identical sequences of region:

AB253704(#882) AB253710(#888) AB253715(#893)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy