CESSHIV-1 database

General information on HIV-1 isolate

# 2230

Accession number	EF370192
Name	00KJS3b_2872s1
Subtype	B
Country	South Korea
Sampling year	2000
Patient	KJS

EF370192 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccatctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EF370209(#1712) EF370331(#1774) EU047642(#1840) EU047643(#1841)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy