CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1710
Accession number EF370198
Name 93LSK10_2788
SubtypeB
CountrySouth Korea
Sampling year 1993
PatientLSK

EF370198 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttt-ag tcagtgtgga aaatctctag ca

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy