CESSHIV-1 database

General information on HIV-1 isolate

# 2238

Accession number	EF370226
Name	03KJinS9c_2884s1
Subtype	B
Country	South Korea
Sampling year	2003
Patient	KJin

EF370226 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AB287372(#938) AF042100(#122) DQ295194(#571) EF370184(#2228) EF370187(#2229) EF370189(#1709) EF370210(#1713) EF370212(#1714) EF370213(#2234) EF370214(#1715) EF370215(#2235) EF370222(#1717) EF370233(#1722) EF370244(#1721) EF370245(#2240) EF370246(#1725) EF370249(#1727) EF370251(#2242) EF370259(#1731) EF370260(#1732) EF370287(#2254) EF370289(#1743) EF370307(#1755) EF370308(#1756) EF370309(#1757) EF370310(#1758) EF370311(#1759) EF370313(#1761) EF370319(#1764) EF370321(#1766) EF370342(#1781) EF370347(#1785) EF370361(#1793) EF370369(#1796) EU047644(#1842) EU047651(#1847) EU047671(#2843) EU047677(#1871) EU047679(#1875) EU047681(#1877) EU047685(#1881) EU047687(#1883) EU047688(#1884) M93258(#7) M93259(#6) U23487(#18) U43096(#2501) U80532(#2551) U81473(#2578) U81474(#2579)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy