CESSHIV-1 database

General information on HIV-1 isolate

# 1741

Accession number	EF370274
Name	01KMH11_2740
Subtype	B
Country	South Korea
Sampling year	2001
Patient	KMH

EF370274 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccattta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EF370275(#2249) EU735539(#1053)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy