CESSHIV-1 database

General information on HIV-1 isolate

# 2257

Accession number	EF370302
Name	96HSH7b_2440s
Subtype	B
Country	South Korea
Sampling year	1996
Patient	HSH(KR39)

EF370302 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gactctttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EU047614(#1816) EU047615(#1817) EU047616(#1818) EU047617(#1819) EU047618(#1820) EU047620(#1625) EU047622(#1824) EU047624(#1826) EU047625(#1827)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy